A few questions
1) Can you change the email sent to new users?
Not quite yet, but it's something that will be implemented
2) Is there somewhere you can be notified when a user creates an account. Right now im going into admin, website accounts, and looking for non-member rank.
You can force new accounts to require authorization by you and the officers, otherwise no. If you're talking for promoting them to the proper rank, be sure to have them click the "Wrong?" link located next to their rank in the "Logged in" box.
3) Can we get rid of the top sections of the admin w/ the faq, upgrade/cancel/renew option.
Nope.