A lot of the things you have proposed are things that I do manually now, except we use it as DKP instead of the alternative system you've dubbed "Raid Points".
People in our guild get points for signing up for a raid, showing up on time, being in a group that downs a boss for the first time, etc. They lose points for not signing up, signing up saying they're coming and then not showing, leaving early, whatever.
It would be great if the website was able to track things like this as some kind of statistic. Perhaps not a completely separate system like you suggested, but some kind of simple way to get this information and tie it to our point systems rather than doing all of it manually.
The rest makes sense to me except for this:
All of this is also leading up to a final part of the quest which is another command within the in-game mod that allows us to make a snapshot that will goto a separate file. If we could type, for example : /grss singlesnap Anetheron we would end up with a file thats called Anetheron-091108.??? that we could upload singly.
Or I guess it could all be tied into the mod the way it works now and we could just get some kind of command like : /grss gpsnap and it would automatically know to put points from those snapshots into the guild points system.
We can already take manual snapshots and call them different things. They don't exist as separate files, but they're all there when you upload your stuff at the end of a raid.
I take a snapshot when the raid starts to see who's on time, and another when it ends to see who stayed the whole time and who left early. I have raid destinations set that rewards the appropriate amount of points for snapshots named "On Time", but the deductions have to be done manually.
Sounds like you have some sweet ideas to help people like you and I manage things better, but some further clarification would be great.