Now do I need to setup the loot system on our web page in a special way since we're not using DKP. Never had to setup or loot system on our page before so I have no idea what I'm doing. Is there any type of walk through for setting up the loot system without DKP?
Not really. There's not much to do by way of initialization if you're not tracking points. If you want to track attendance, then I recommend initializing the Destinations, that way you can get more detailed information about attendance. But as for configuring, there's not much you need to do. Items will get initialized as they are captured by the mod (as they are received).
That's pretty much it.