Ok so We have a graphics designer in our guilds she has spent a lot of time creating our logo. It is great the way it is but it wont align to the top it covers the news and log-in/out section. So when we use the auto resizing. it does away with the translucency.??? is this an error or am I doing something wrong?

Your best bet is going to be resizing the image to the proper size in your graphics editor, then placing the logo accordingly in the CSS (look for #logo in the CSS).